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Eilert Tunheim · Eilert Tunheim · Eilert Tunheim · Eilert Tunheim · Eilert Tunheim · Eilert Tunheim
--- a/Bachelor_application.iml
+++ b/Bachelor_application.iml
@@ -55,7 +55,6 @@
    <orderEntry type="library" name="Maven: com.google.auto.value:auto-value-annotations:1.9" level="project" />
    <orderEntry type="library" name="Maven: org.apache.commons:commons-math3:3.6.1" level="project" />
    <orderEntry type="library" name="Maven: joda-time:joda-time:2.10.14" level="project" />
-    <orderEntry type="library" name="Maven: org.jblas:jblas:1.2.4" level="project" />
    <orderEntry type="library" scope="TEST" name="Maven: junit:junit:4.13.2" level="project" />
    <orderEntry type="library" scope="TEST" name="Maven: org.hamcrest:hamcrest-core:1.3" level="project" />
    <orderEntry type="library" scope="TEST" name="Maven: org.junit.jupiter:junit-jupiter:5.9.0-M1" level="project" />

--- a/README.md
+++ b/README.md
-Bachelor oppgave vår 2022
+#Bachelor Thesis Spring 2022
-Awesome teamates:
+This application visualize live- and historical data and calculates an estimate based on logistic regression that the drying operator can choose to follow in order to minimize over-drying.
+The development team:
+* #### Eilert Tunheim
+* #### Mads Greni Arnesen
+* #### Karin Pettersen
+Link to repo: https://git.gvk.idi.ntnu.no/mesji/bacheloroppgave_2022
+## Deployment Instructions
+The java .jar file is located under `out\artifacts\Bachelor_application`
+In order to run the jar file, please use the following command:
+`java -jar Bachelor_application.jar`
-Karin
-Mads
-Eilert
--- a/pom.xml
+++ b/pom.xml
@@ -40,14 +40,8 @@
            <artifactId>joda-time</artifactId>
            <version>2.10.14</version>
        </dependency>
-        <dependency>
-            <groupId>org.jblas</groupId>
-            <artifactId>jblas</artifactId>
-            <version>1.2.4</version>
-        </dependency>
        <!-- https://mvnrepository.com/artifact/org.openjfx/javafx -->
        <dependency>
            <groupId>org.openjfx</groupId>
            <artifactId>javafx</artifactId>
@@ -72,8 +66,6 @@
            <version>RELEASE</version>
            <scope>test</scope>
        </dependency>
    </dependencies>
    <properties>

--- a/src/main/java/com/application/DB/AccountHandler.java
+++ b/src/main/java/com/application/DB/AccountHandler.java
@@ -5,12 +5,24 @@ import com.application.GUI.PopUpWindows.NotificationPopUp;
 import com.google.cloud.bigquery.FieldValueList;
 import com.google.cloud.bigquery.TableResult;
-import static com.application.DB.Constants.*;
 import static com.application.DB.Settings.*;
 import static com.application.GUI.PopUpWindows.LoginPopup.getPasswordTextField;
+/**
+ * This class handles the login system and all related functionality
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class AccountHandler {
+    /**
+     * This function iterates through the results and sets the information
+     *
+     * @param username input parameter for the username
+     * @param password input parameter for the password
+     * @throws Exception throws exception if anything goes wrong
+     */
    public static void getAccountInformation(String username, String password) throws Exception {
        TableResult result = logIn(username,password);
@@ -20,19 +32,19 @@ public class AccountHandler {
                if (row.get("Username").getValue().equals(username)) {
                    CreateLogoBar.getLogin().setText(username);
-                    setUserName(username);
+                    HelpingFunctions.setUserName(username);
                    if (!row.get("Phone_no").isNull()) {
-                        setPhoneNo(row.get("Phone_no").getStringValue());
+                        HelpingFunctions.setPhoneNo(row.get("Phone_no").getStringValue());
                    }
                    if (!row.get("First_name").isNull()) {
-                        setFirstName(row.get("First_name").getStringValue());
+                        HelpingFunctions.setFirstName(row.get("First_name").getStringValue());
                    }
                    if (!row.get("Last_name").isNull()) {
-                        setLastName(row.get("Last_name").getStringValue());
+                        HelpingFunctions.setLastName(row.get("Last_name").getStringValue());
                    }
                    if (!row.get("Admin").isNull()) {
-                        setIsAdmin(row.get("Admin").getBooleanValue());
+                        HelpingFunctions.setIsAdmin(row.get("Admin").getBooleanValue());
                    }
                }
            }
@@ -42,6 +54,14 @@ public class AccountHandler {
        }
    }
+    /**
+     * This function creates the login sql statement and returns a TableResult to be iterated through
+     *
+     * @param username input parameter for the username
+     * @param password input parameter for the password
+     * @return a TableResult that can be iterated through
+     * @throws Exception throws exception if anything goes wrong
+     */
    public static TableResult logIn(String username, String password) throws Exception {
        // Sqlstatement
@@ -56,6 +76,13 @@ public class AccountHandler {
        return HelpingFunctions.createQueryJob(sqlStatement);
    }
+    /**
+     * Retrieves information regarding an account based on the username input
+     *
+     * @param username input parameter for the username
+     * @return a TableResult that can be iterated through
+     * @throws Exception throws exception if anything goes wrong
+     */
    public static TableResult getAccount(String username) throws Exception {
        // Sqlstatement
@@ -70,6 +97,18 @@ public class AccountHandler {
        return HelpingFunctions.createQueryJob(sqlStatement);
    }
+    /**
+     * This function takes a number of parameters as input and creates a user in the database
+     *
+     * @param firstName input parameter for firstname
+     * @param lastName input parameter for lastName
+     * @param phoneNo input parameter for phoneNo
+     * @param username input parameter for username
+     * @param password input parameter for password
+     * @param isAdmin input parameter from the checkbox is the account is admin or not
+     * @return a boolean if the user was added or not
+     * @throws Exception throws exception if anything goes wrong
+     */
    public static boolean addUser(String firstName, String lastName, String phoneNo, String username, String password, boolean isAdmin) throws Exception {
        if(getAccount(username).getTotalRows() == 0) {
@@ -87,6 +126,13 @@ public class AccountHandler {
        }
    }
+    /**
+     * This function deletes an account based on the username input parameter
+     *
+     * @param username input parameter for username
+     * @return a boolean if the user was deleted or not
+     * @throws Exception throws exception if anything goes wrong
+     */
    public static boolean deleteUser(String username) throws Exception {
        if(getAccount(username).getTotalRows() != 0){
@@ -102,5 +148,4 @@ public class AccountHandler {
            return false;
        }
    }
 }
--- a/src/main/java/com/application/DB/Constants.java
+++ b/src/main/java/com/application/DB/Constants.java
 package com.application.DB;
+/**
+ * This class contain a number of constants used throughout the application
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class Constants {
-    // Key name file for the database access
-    public static String KEY_FILE_NAME = "sf-drying-optimization-8a2e1b7ffc14.json";
    // Time related constants
    public static String START_TIME = "";
    public static String STOP_TIME = "";
@@ -22,60 +25,9 @@ public class Constants {
    public static String SAWSET = "";
    public static String MOISTURE_GOAL = "";
-    // Number of manual moisture checks
-    public static int NUMBER_OF_CHECKS = 1;
-    // Max number of input characters for sql injection prevention
-    public static int MAX_USER_INPUT_CHARACTERS = 10;
    // Boolean constants to toggle default launch selected or not for checkboxes for showing graphs
    public static boolean DEFAULT_IS_SELECTED_LIVE_DATA = true;
    public static boolean DEFAULT_IS_SELECTED_REGRESSION = true;
    public static boolean DEFAULT_IS_SELECTED_REGRESSION_SHADOW = false;
    public static boolean DEFAULT_IS_SELECTED_PREVIOUS_DATA = true;
-    // Account constants
-    private static boolean isAdmin = false;
-    private static String firstName;
-    private static String lastName;
-    private static String userName;
-    private static String phoneNo;
-    public static String getUserName() { return userName;}
-    public static void setUserName(String userName) {
-        Constants.userName = userName;
-    }
-    public static String getPhoneNo() {
-        return phoneNo;
-    }
-    public static void setPhoneNo(String phoneNo) {
-        Constants.phoneNo = phoneNo;
-    }
-    public static boolean isIsAdmin() {
-        return isAdmin;
-    }
-    public static void setIsAdmin(boolean isAdmin) {
-        Constants.isAdmin = isAdmin;
-    }
-    public static String getFirstName() {
-        return firstName;
-    }
-    public static void setFirstName(String firstName) {
-        Constants.firstName = firstName;
-    }
-    public static String getLastName() {
-        return lastName;
-    }
-    public static void setLastName(String lastName) {
-        Constants.lastName = lastName;
-    }
 }
--- a/src/main/java/com/application/DB/DB.java
+++ b/src/main/java/com/application/DB/DB.java
@@ -13,36 +13,28 @@ import static com.application.DB.HelpingFunctions.getNoOfChambers;
 * This class is responsible for handling database related activities
 *
 * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
- * @version 1.0
+ * @version 1.0.0
 */
 public class DB {
    /**
-     * Launching the functions
+     * This function gathers all input parameters from the user and search for data
     *
-     * @param args default param
+     * @return a map containing drying cycles
-     * @throws Exception throws exception in case of error
+     * @throws Exception throws exception if error occurs
     */
-    public static void main(String[] args) throws Exception {
-        //getKwh();
-        //getName();
-        //getZeroPointDate();
-        //System.out.println(setInputParameters());
-        //getNoOfChambers();
-    }
    public static Map<Integer, Map<String, Number>> setInputParameters() throws Exception {
+        // Map to store data
        Map<Integer, Map<String, Number>> allDryingPeriods = new HashMap<>();
+        // Variables to indicate if the parameters have been deleted or not
        boolean sawsetRemoved = false;
        boolean treespeciesRemoved = false;
        boolean dimensionsRemoved = false;
        boolean moistureRemoved = false;
+        // Defining variables
        HashMap<java.lang.String, java.lang.String> locationTables = null;
        ArrayList<Integer> valmeticsChamberIDS = null;
        ArrayList<Integer> kwhChamberIDS = null;
@@ -76,11 +68,13 @@ public class DB {
        getNoOfChambers();
        int chamberNo = 1;
+        // While loop that check for data
        while(true){
+            // Map to store data
            Map<Integer, Map<String, Number>> intermediateHashMap = new HashMap<>();
+            // Iterating through all the sawmills
            for (HashMap.Entry<Integer, HashMap<String, HashMap<String, String>>> location : Settings.getSawmills().entrySet()) {
                // Clears the extraInputs variable
@@ -89,12 +83,9 @@ public class DB {
                System.out.printf("\nLocation ID: \t%s\t\t\tRest of map: \t%s\n", location.getKey(), location.getValue());
                System.out.println("Number of sawmills: "+ Settings.getSawmills().size());
-                //allDryingPeriods = new TreeMap<>();
                locationID = location.getKey();
-                //System.out.println(location.getValue());
+                // If the location is 124, "Furu" is stored as "Fura" in the database, swedish
                if (location.getKey() == 124) {
                    // If location is Valasen, then the database stores furu as fura, swedish.
                    if (Constants.TREE_SPECIES.equalsIgnoreCase("Furu")) {
@@ -226,6 +217,7 @@ public class DB {
            }
        }
+        // Prints all the drying periods
        System.out.println(allDryingPeriods.size());
        for (Map.Entry<Integer, Map<String, Number>> entry : allDryingPeriods.entrySet()) {
            System.out.printf("Timestamp: \t%s\t\t\tkWh: \t%s\n", entry.getKey(), entry.getValue());
@@ -283,7 +275,7 @@ public class DB {
                finalResults.put(index, sortedData);
                index += 1;
-                // entry.value burde matche med en av de og går igjennom alle
+                //  checks for manual moisture
                for (Map.Entry<String, String> moistureEntry : HelpingFunctions.getManMoist().entrySet()) {
                    if(moistureEntry.getKey().equals(entry.getValue())){
@@ -304,17 +296,7 @@ public class DB {
        // Defining a treemap to sort the data incrementally
        NavigableMap<Integer, Map<String, Number>> sortedFinalResults = new TreeMap<>(finalResults);
-        for (Map.Entry<Integer, Map<String, Number>> entry : sortedFinalResults.entrySet()) {
+        // Prints the values
-            Map<String, Number> data = entry.getValue();
-            for (Map.Entry<String, Number> moistureEntry : data.entrySet()) {
-                //System.out.println("Data key: "+moistureEntry.getKey());        // Key = datetime: 2022-01-18 20:23:36
-                //System.out.println("Data Value: "+moistureEntry.getValue());    // Value = kwh: 5422
-            }
-        }
        for (Map.Entry<Integer, Map<String, Number>> entry : sortedFinalResults.entrySet()) {
            System.out.printf("Timestamp: \t%s\t\t\tkWh: \t%s\n", entry.getKey(), entry.getValue());
        }
@@ -388,8 +370,6 @@ public class DB {
            kilinID += 1;
        }
        // Retrieves the results from the queryjob
        TableResult result = HelpingFunctions.createQueryJob(sqlStatement);
@@ -420,11 +400,6 @@ public class DB {
                }
            }
-            //System.out.println("Start: "+row.get("DryingStarted").getTimestampValue());
-            //System.out.println("Stop: "+row.get("DryingCompleted").getTimestampValue());
            // Retrieving the data
            // DryingStarted:
            if(!row.get("DryingStarted").isNull()){
@@ -451,14 +426,8 @@ public class DB {
                    }
                    else formatedInTidTork = row.get("DryingStarted").getValue().toString();
                }
-                // Checks if response is given in a string date format
-                //if(row.get("DryingStarted").getValue().equals(Long.parseLong(row.get("DryingStarted").getValue().toString()))) {
            }
-            // CalculatedStop:
            // DryingCompleted:
            // Check if response is given in millis
            try{
@@ -481,8 +450,6 @@ public class DB {
            }
            // Getting manual measurement:
            // Adding days to search between
            String date = formatedUtTidTork.split(" ")[0];
@@ -529,18 +496,11 @@ public class DB {
             */
-            //System.out.println("Inn formated: "+formatedInTidTork);
-            //System.out.println("Ut formated: "+formatedUtTidTork+"\n");
            // Checks if intidtork or outtidtork is empty, if so they are ignored and not added to the list
            if (!formatedInTidTork.isEmpty() && !formatedUtTidTork.isEmpty()){
                // Adds the data to the dates map
                dates.put(formatedInTidTork,formatedUtTidTork);
            }
-            //System.out.printf("%s\t\t\t%s\n",formatedInTidTork,formatedUtTidTork);
        }
        // Defining a treemap to sort the data incrementally
@@ -566,6 +526,12 @@ public class DB {
    }
+    /**
+     * This function push the manual moisture level
+     *
+     * @param moisture input parameter for measured value
+     * @throws Exception throws exception in case of error
+     */
    public static void pushManMoisture(String moisture) throws Exception {
        String startTime = null;
@@ -606,7 +572,7 @@ public class DB {
        // Sqlstatement
        final String sqlStatement =
                "INSERT INTO " + PROJECT_ID + "." + LOCATION_ID + "." + MAN_MOISTURE_TABLE + "(moisture,tree_species,dimensions,sawset,moisture_goal,no_moisture_check,start_time,stop_time,finished) " +
-                        "VALUES("+moisture+","+treeSpecies+","+dimensions+","+sawset+","+moistureGoal+","+ Constants.NUMBER_OF_CHECKS+","+startTime+","+stopTime+","+IS_FINISHED+") ";
+                        "VALUES("+moisture+","+treeSpecies+","+dimensions+","+sawset+","+moistureGoal+","+ NUMBER_OF_CHECKS+","+startTime+","+stopTime+","+IS_FINISHED+") ";
        System.out.println(sqlStatement);
@@ -639,11 +605,8 @@ public class DB {
        // Retrieves the results from the queryjob
        TableResult result = HelpingFunctions.createQueryJob(sqlStatement);
-        //System.out.println("InTidTork\t\t\tUtTidTork");
        // Iterating through the results
        HelpingFunctions.iterateKwhValues(data, result, KWH_NAME_PARAMETER, KWH_TIMESTAMP_NAME_PARAMETER);
        return new TreeMap<>(data);
    }
 }
--- a/src/main/java/com/application/DB/HelpingFunctions.java
+++ b/src/main/java/com/application/DB/HelpingFunctions.java
@@ -4,7 +4,6 @@ import com.application.GUI.PopUpWindows.NotificationPopUp;
 import com.google.auth.oauth2.GoogleCredentials;
 import com.google.auth.oauth2.ServiceAccountCredentials;
 import com.google.cloud.bigquery.*;
-import io.opencensus.internal.StringUtils;
 import java.io.File;
 import java.io.FileInputStream;
@@ -13,18 +12,32 @@ import java.util.HashMap;
 import java.util.Map;
 import java.util.TimeZone;
-import static com.application.DB.Constants.KEY_FILE_NAME;
-import static com.application.DB.Constants.MAX_USER_INPUT_CHARACTERS;
 import static com.application.DB.Settings.*;
+/**
+ * This class contain a number of helping function that is accessed throughout the application
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class HelpingFunctions {
+    // Key name file for the database access
+    public static String KEY_FILE_NAME = "sf-drying-optimization-8a2e1b7ffc14.json";
+    // Map to store manual moisture
    static Map<String,String> manMoist = new HashMap<>();
+    // Account constants
+    static boolean isAdmin = false;
+    static String firstName;
+    static String lastName;
+    static String userName;
+    static String phoneNo;
    /**
-     * Creates a simple date format to use for converting millis in numbers to a usefull date format
+     * Creates a simple date format to use for converting millis in numbers to a useful date format
     *
     * @return returns the date format
     */
@@ -150,6 +163,11 @@ public class HelpingFunctions {
        }
    }
+    /**
+     * This function gets the total number of chambers that are searched for
+     *
+     * @return an integer indecating the total number of chambers
+     */
    public static int getNoOfChambers(){
        int valmeticsChamberIDS = 0;
        int kwhChamberIDS = 0;
@@ -170,6 +188,24 @@ public class HelpingFunctions {
        return noOfChambers;
    }
+    /**
+     * This function handles input validation
+     *
+     * @param input string of input parameter from the user to be checked
+     * @return a boolean to indicate if the input is accepted or not
+     */
+    public static boolean isValidInput (String input){
+    if(input.length() > MAX_USER_INPUT_CHARACTERS) {
+        NotificationPopUp.displayNotificationWindow("A maximum of "+MAX_USER_INPUT_CHARACTERS+" characters is allowed!");
+        return true;
+    }
+    else if(input.toLowerCase().contains("union")){
+        NotificationPopUp.displayNotificationWindow("Keyword: 'UNION' is not allowed");
+        return true;
+    }
+    else return false;
+}
    public static boolean isLoadedData() {
        return Constants.LOADED_DATA;
    }
@@ -178,21 +214,41 @@ public class HelpingFunctions {
        Constants.LOADED_DATA = loadedData;
    }
+    public static String getUserName() { return userName;}
-public static boolean isValidInput (String input){
+    public static void setUserName(String userName) {
-    if(input.length() > Constants.MAX_USER_INPUT_CHARACTERS) {
+        HelpingFunctions.userName = userName;
-        NotificationPopUp.displayNotificationWindow("A maximum of "+MAX_USER_INPUT_CHARACTERS+" characters is allowed!");
-        return true;
    }
-    else if(input.toLowerCase().contains("union")){
-        NotificationPopUp.displayNotificationWindow("Keyword: 'UNION' is not allowed");
+    public static String getPhoneNo() {
-        return true;
+        return phoneNo;
    }
-    else return false;
-}
+    public static void setPhoneNo(String phoneNo) {
+        HelpingFunctions.phoneNo = phoneNo;
+    }
+    public static boolean isIsAdmin() {
+        return isAdmin;
+    }
+    public static void setIsAdmin(boolean isAdmin) {
+        HelpingFunctions.isAdmin = isAdmin;
+    }
+    public static String getFirstName() {
+        return firstName;
+    }
+    public static void setFirstName(String firstName) {
+        HelpingFunctions.firstName = firstName;
+    }
+    public static String getLastName() {
+        return lastName;
+    }
+    public static void setLastName(String lastName) {
+        HelpingFunctions.lastName = lastName;
+    }
 }
--- a/src/main/java/com/application/DB/Settings.java
+++ b/src/main/java/com/application/DB/Settings.java
@@ -5,7 +5,10 @@ import java.util.Arrays;
 import java.util.HashMap;
 /**
- * This class contains constants to be used related to database activities
+ * This class contains changeable settings for the application
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
 */
 public final class Settings {
@@ -13,6 +16,11 @@ public final class Settings {
        // Empty constructor
    }
+    // Number of manual moisture checks
+    public static int NUMBER_OF_CHECKS = 1;
+    // Max number of input characters for sql injection prevention
+    public static int MAX_USER_INPUT_CHARACTERS = 15;
    // Number of wanted drying periods
    public static int NUMBER_OF_PERIODS = 2;

--- a/src/main/java/com/application/GUI/LineChartFunctionality.java
+++ b/src/main/java/com/application/GUI/LineChartFunctionality.java
--- a/src/main/java/com/application/GUI/Panes/CreateBottomBar.java
+++ b/src/main/java/com/application/GUI/Panes/CreateBottomBar.java
@@ -8,6 +8,12 @@ import javafx.scene.control.CheckBox;
 import javafx.scene.control.Label;
 import javafx.scene.layout.HBox;
+/**
+ * This class creates the bottombar
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class CreateBottomBar {
    private final Main main;
@@ -15,6 +21,11 @@ public class CreateBottomBar {
        this.main = main;
    }
+    /**
+     * This function create the bottombar
+     *
+     * @return the finished bottombar
+     */
    public HBox createBottomBar() {
        HBox hBox = new HBox();
@@ -72,7 +83,7 @@ public class CreateBottomBar {
            }
        });
+        // Adds all the components to the HBox
        hBox.getChildren().addAll(liveDataText, Main.getLiveDataBox(), regressionText, Main.getRegressionBox(), regressionConfidenceIntervalText, Main.getRegressionConfidenceIntervalBox(), previousText, Main.getPreviousBox());
        hBox.setAlignment(Pos.CENTER_RIGHT);
        hBox.setSpacing(5);

--- a/src/main/java/com/application/GUI/Panes/CreateLogoBar.java
+++ b/src/main/java/com/application/GUI/Panes/CreateLogoBar.java
@@ -11,17 +11,24 @@ import javafx.scene.layout.Region;
 import java.io.FileInputStream;
 import java.io.FileNotFoundException;
-import static com.application.DB.Constants.isIsAdmin;
+import static com.application.DB.HelpingFunctions.isIsAdmin;
+/**
+ * This class creates the logobar
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class CreateLogoBar {
+    // The login button
    private static Button login = new Button("Login");
    /**
     * This function imports the logos and defines the alignments
     *
     * @return a logoBar containing the logos in proper alignments
-     * @throws FileNotFoundException
+     * @throws FileNotFoundException throws exception if an error occurs
     */
    public HBox createLogoBar() throws FileNotFoundException {
        // Defining the image paths

--- a/src/main/java/com/application/GUI/Panes/CreateMenuBar.java
+++ b/src/main/java/com/application/GUI/Panes/CreateMenuBar.java
@@ -8,6 +8,12 @@ import javafx.scene.control.CheckMenuItem;
 import javafx.scene.control.Menu;
 import javafx.scene.control.MenuItem;
+/**
+ * This class creates the menubar
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class CreateMenuBar {
    private final Main main;
@@ -19,7 +25,7 @@ public class CreateMenuBar {
     * Creates the menubar with buttons.
     * Defines each action when button is clicked.
     *
-     * @return MenuBar as a HBox
+     * @return MenuBar as a menubar
     */
    public javafx.scene.control.MenuBar createMenuBar() {
@@ -31,19 +37,23 @@ public class CreateMenuBar {
        Menu menuView = new Menu("View");
        Menu menuHelp = new Menu("Help");
+        // Adds menu item for file
        MenuItem menuFileExit = new MenuItem("Exit");
        menuFileExit.setOnAction(event -> Main.exitApplication());
+        // Adds menu item for view
        Main.setMenuViewLiveData(new CheckMenuItem("Live Data"));
        main.setMenuViewRegression(new CheckMenuItem("Regression"));
        main.setMenuViewRegressionShadow(new CheckMenuItem("Regression Shadow"));
        main.setMenuViewPreviousData(new CheckMenuItem("Previous Data"));
+        // Sets the default values
        Main.getMenuViewLiveData().setSelected(Constants.DEFAULT_IS_SELECTED_LIVE_DATA);
        Main.getMenuViewRegression().setSelected(Constants.DEFAULT_IS_SELECTED_REGRESSION);
        Main.getMenuViewRegressionShadow().setSelected(Constants.DEFAULT_IS_SELECTED_REGRESSION_SHADOW);
        Main.getMenuViewPreviousData().setSelected(Constants.DEFAULT_IS_SELECTED_PREVIOUS_DATA);
+        // Sets the updated value when the box is checked or unchecked
        Main.getMenuViewLiveData().setOnAction(event -> {
            if (Main.getMenuViewLiveData().isSelected()) {
                LineChartFunctionality.setPrintLiveData(true);
@@ -53,6 +63,8 @@ public class CreateMenuBar {
                LineChartFunctionality.printGraphs();
            }
        });
+        // Sets the updated value when the box is checked or unchecked
        Main.getMenuViewRegression().setOnAction(event -> {
            if (Main.getMenuViewRegression().isSelected()) {
                LineChartFunctionality.setPrintRegression(true);
@@ -62,6 +74,8 @@ public class CreateMenuBar {
                LineChartFunctionality.printGraphs();
            }
        });
+        // Sets the updated value when the box is checked or unchecked
        Main.getMenuViewRegressionShadow().setOnAction(event -> {
            if (Main.getMenuViewRegressionShadow().isSelected()) {
                LineChartFunctionality.setPrintRegressionConfidenceInterval(true);
@@ -71,6 +85,8 @@ public class CreateMenuBar {
                LineChartFunctionality.printGraphs();
            }
        });
+        // Sets the updated value when the box is checked or unchecked
        Main.getMenuViewPreviousData().setOnAction(event -> {
            if (Main.getMenuViewPreviousData().isSelected()) {
                LineChartFunctionality.setPrintPreviousData(true);
@@ -81,12 +97,13 @@ public class CreateMenuBar {
            }
        });
+        // Adds menu item for Help
        MenuItem aboutUs = new MenuItem("About Us");
        aboutUs.setOnAction(event -> getAboutUs());
        MenuItem help = new MenuItem("Help");
        help.setOnAction(event -> getHelp());
+        // Adds all components to the menus
        menuFile.getItems().addAll(menuFileExit);
        menuView.getItems().addAll(Main.getMenuViewLiveData(), Main.getMenuViewRegression(), Main.getMenuViewRegressionShadow(), Main.getMenuViewPreviousData());
        menuHelp.getItems().addAll(aboutUs, help);

--- a/src/main/java/com/application/GUI/Panes/CreateSideBar.java
+++ b/src/main/java/com/application/GUI/Panes/CreateSideBar.java
@@ -20,16 +20,28 @@ import static com.application.GUI.LineChartFunctionality.getDataPointsXAxis;
 import static com.application.GUI.LineChartFunctionality.getLiveData;
 import static java.util.logging.Level.SEVERE;
+/**
+ * This class creates the sidebar
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class CreateSideBar {
    public CreateSideBar(Main main) {
    }
+    /**
+     * This function creates the sidebar
+     *
+     * @return the finished sidebar
+     */
    public VBox createSideBar() {
        // Creating a vbox
        VBox sideBarVBox = new VBox();
+        // Defining label and text-field for tree species
        Label treeSpeciesLabel = new Label("Tree Species");
        treeSpeciesLabel.setId("sideBarLabelText");
        Main.setTreeSpeciesText(new TextField());
@@ -38,6 +50,7 @@ public class CreateSideBar {
        Main.getTreeSpeciesText().setText(Constants.TREE_SPECIES);
        Main.getTreeSpeciesText().setEditable(false);
+        // Defining label and text-field for dimensions
        Label dimensionsLabel = new Label("Width x Height");
        dimensionsLabel.setId("sideBarLabelText");
        Main.setDimensionsText(new TextField());
@@ -46,6 +59,7 @@ public class CreateSideBar {
        Main.getDimensionsText().setText(Constants.DIMENSIONS);
        Main.getDimensionsText().setEditable(false);
+        // Defining label and text-field for sawset
        Label sawsetLabel = new Label("Sawset");
        sawsetLabel.setId("sideBarLabelText");
        Main.setSawsetText(new TextField());
@@ -54,6 +68,7 @@ public class CreateSideBar {
        Main.getSawsetText().setText(Constants.SAWSET);
        Main.getSawsetText().setEditable(false);
+        // Defining label and text-field for moisture goal
        Label moistureGoalLabel = new Label("Moisture Goal");
        moistureGoalLabel.setId("sideBarLabelText");
        Main.setMoistureGoalText(new TextField());
@@ -62,6 +77,7 @@ public class CreateSideBar {
        Main.getMoistureGoalText().setText(Constants.MOISTURE_GOAL);
        Main.getMoistureGoalText().setEditable(false);
+        // Defining label and text-field timeleft
        Label timeLeftLabel = new Label("Time Left");
        timeLeftLabel.setId("sideBarLabelText");
        Main.setTimeLeftText(new TextField());
@@ -70,6 +86,7 @@ public class CreateSideBar {
        Main.getTimeLeftText().setText(Constants.TIME_LEFT);
        Main.getTimeLeftText().setEditable(false);
+        // Define buttons
        Button inputParametersButton = new Button("Input Parameters");
        inputParametersButton.setId("sideBarButtonInputParameters");
        inputParametersButton.setOnAction(e -> InputPopup.display());
@@ -89,6 +106,7 @@ public class CreateSideBar {
        ringProgressIndicator.makeIndeterminate();
        ringProgressIndicator.setId("progressBar");
+        // Defines thread for updating the circular progressbar
        class WorkerThread extends Thread{
            RingProgressIndicator rpi;
            int progress = 0;
@@ -126,10 +144,9 @@ public class CreateSideBar {
                }
            }
        }
        new WorkerThread(ringProgressIndicator).start();
+        // Adds all the components to the VBox
        sideBarVBox.getChildren().addAll(ringProgressIndicator, treeSpeciesLabel, Main.getTreeSpeciesText(), dimensionsLabel, Main.getDimensionsText(),
                sawsetLabel, Main.getSawsetText(), moistureGoalLabel, Main.getMoistureGoalText(), timeLeftLabel, Main.getTimeLeftText(), inputParametersButton, finishButton, exitButton);

--- a/src/main/java/com/application/GUI/PopUpWindows/InputPopup.java
+++ b/src/main/java/com/application/GUI/PopUpWindows/InputPopup.java
@@ -17,7 +17,6 @@ import java.util.Map;
 import static com.application.DB.HelpingFunctions.isValidInput;
 import static com.application.DB.Settings.*;
 import static com.application.DB.DB.getCurrentDrying;
-import static com.application.DB.Constants.MAX_USER_INPUT_CHARACTERS;
 import static com.application.DB.HelpingFunctions.setLoadedData;
 import static com.application.GUI.LineChartFunctionality.*;
 import static com.application.GUI.Panes.CreateLogoBar.getLogin;
@@ -33,6 +32,9 @@ import static com.application.DB.DB.setInputParameters;
 */
 public class InputPopup {
+    /**
+     * This function displays the input parameter window
+     */
    public static void display() {
        Stage window = new Stage();
@@ -128,10 +130,9 @@ public class InputPopup {
                Constants.MOISTURE_GOAL = moistureList.getValue();
            }
            boolean err = false;
+            // If an account is not logged in, then the search is not started
            if(getLogin().getText().equals("Login")){
                err = true;
                NotificationPopUp.displayNotificationWindow("Please login!");
@@ -151,33 +152,22 @@ public class InputPopup {
                Constants.MOISTURE_GOAL = "";
            }
-            System.out.println(getLogin().getText());
-            System.out.println("TREE_SPECIES: "+ Constants.TREE_SPECIES);
-            System.out.println("DIMENSIONS: "+ Constants.DIMENSIONS);
-            System.out.println("SAWSET: "+ Constants.SAWSET);
-            System.out.println("MOISTURE_GOAL: "+ Constants.MOISTURE_GOAL);
            // Validates inputs
            if(isValidInput(Constants.TREE_SPECIES) ||
                    isValidInput(Constants.DIMENSIONS) ||
                    isValidInput(Constants.SAWSET) ||
                    isValidInput(Constants.MOISTURE_GOAL)) {
                err = true;
                treeSpeciesList.setValue("");
                dimensionsList.setValue("");
                sawsetList.setValue("");
                moistureList.setValue("");
            }
+            // Checks if there is an error, if so the search is not started
            if (!err) {
+                // Sets the values in the text-fields
                setTreeSpeciesText(Constants.TREE_SPECIES);
                setDimensionsText(Constants.DIMENSIONS);
                setSawsetText(Constants.SAWSET);
@@ -185,11 +175,7 @@ public class InputPopup {
                window.close();
+            // Gather data thread
-            // Fungerende ny thread!!@@@@@
-            // Gather data
            try {
                Thread thread = new Thread(() -> {
@@ -213,9 +199,7 @@ public class InputPopup {
                thread.setDaemon(true);
                thread.interrupt();
                thread.join();
-                //Platform.exit();
                thread.start();
            } catch (Exception ex) {
                ex.printStackTrace();
            }
@@ -245,101 +229,14 @@ public class InputPopup {
                liveDataThread.setDaemon(true);
                liveDataThread.interrupt();
                liveDataThread.join();
-                //Platform.exit();
                liveDataThread.start();
-            } catch (Exception ex) {
-                ex.printStackTrace();
-            }
-        } else {
-            }
-                }
-        );
-/*
-                    // Fungerende ny thread!!@@@@@
-                    try{
-                        Thread thread = new Thread(new Runnable() {
-                            @Override
-                            public void run() {
-                                try {
-                                    // Henter her data fra databasen
-                                    loadSingleSeries(setInputParameters());
-                                    //loadSingleSeries();
-                                    //loadMultipleSeries();
-                                } catch (Exception ex) {
-                                    ex.printStackTrace();
-                                }
-                            }
-                        });
-                        thread.start();
-                    } catch (Exception ex) {
-                        ex.printStackTrace();
-                    }
-                }
-                );
-        */
-/*
-            class KwhThread implements Runnable  {
-                Map<Integer, Map<String, Number>> dataVariable;
-                private volatile boolean finished;
-                @Override
-                public void run() {
-                    try{
-                        dataVariable = setInputParameters();
-                    } catch (Exception ex) {
-                        ex.printStackTrace();
-                    }
-                    finished = true;
-                    synchronized (this){
-                        this.notify();
-                    }
-                }
-                public Map<Integer, Map<String, Number>> getDataVariable() throws InterruptedException {
-                    synchronized (this){
-                        if(!finished)
-                        this.wait();
-                    }
-                    return dataVariable;
-                }
-            }
-            KwhThread kwhThread = new KwhThread();
-            Thread thread = new Thread(kwhThread);
-            thread.setName("GetKwhThread");
-            thread.start();
-            try {
-                loadSingleSeries(kwhThread.getDataVariable());
            } catch (Exception ex) {
                ex.printStackTrace();
            }
+        }
+        });
+        // Adds all the components to the VBox
- */
-/*
- */
        VBox layout = new VBox(10);
        layout.getChildren().addAll(inputLabel, treeSpeciesInputLabel, treeSpeciesList, dimensionsInputLabel, dimensionsList,
                sawsetInputLabel, sawsetList, moistureGoalInputLabel, moistureList, startButton);

--- a/src/main/java/com/application/GUI/PopUpWindows/LoginPopup.java
+++ b/src/main/java/com/application/GUI/PopUpWindows/LoginPopup.java
 package com.application.GUI.PopUpWindows;
-import javafx.event.EventHandler;
+import com.application.DB.HelpingFunctions;
 import javafx.geometry.Pos;
 import javafx.scene.Scene;
 import javafx.scene.control.*;
 import javafx.scene.input.KeyCode;
-import javafx.scene.input.KeyEvent;
 import javafx.scene.layout.VBox;
 import javafx.stage.Modality;
 import javafx.stage.Stage;
@@ -14,17 +13,23 @@ import java.nio.charset.StandardCharsets;
 import java.security.MessageDigest;
 import static com.application.DB.AccountHandler.*;
-import static com.application.DB.Constants.*;
 import static com.application.DB.HelpingFunctions.isValidInput;
 import static com.application.GUI.Panes.CreateLogoBar.getLogin;
+/**
+ * This class handles all login functionality
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class LoginPopup {
+    // Defines input fields
    private static PasswordField PASSWORD_TEXT_FIELD = new PasswordField();
    private static TextField USERNAME_TEXT_FIELD = new TextField();
    /**
-     * Tries to login
+     * Tries to log in
     *
     * @return a boolean if an error should be thrown or not. True gives no error, false throws an error.
     */
@@ -43,6 +48,9 @@ public class LoginPopup {
    }
+    /**
+     * This function adds all components to the login window
+     */
    public static void login(){
        Stage window = new Stage();
@@ -56,7 +64,10 @@ public class LoginPopup {
        Button loginButton = new Button("Login");
        getPasswordTextField().clear();
+        // Closes the window if the close button is pressed
        closeButton.setOnAction(event -> window.close());
+        // Handles login if enter is pressed on the keyboard in the password field
        getPasswordTextField().setOnKeyPressed( event -> {
                if (event.getCode() == KeyCode.ENTER) {
                    if(!isValidInput(getPasswordTextField().getText()) && !isValidInput(getUsernameTextField().getText())) {
@@ -67,6 +78,7 @@ public class LoginPopup {
            }
        });
+        // Handles login if the login button is pressed
        loginButton.setOnAction(event -> {
            if(!isValidInput(getPasswordTextField().getText()) && !isValidInput(getUsernameTextField().getText())) {
                if (loginButtonPressed()) {
@@ -75,8 +87,7 @@ public class LoginPopup {
            }
        });
+        // Adds all components
        VBox layout = new VBox(10);
        layout.setAlignment(Pos.CENTER);
        layout.getChildren().addAll(userNameLabel, getUsernameTextField(), passwordLabel, getPasswordTextField(), loginButton, closeButton);
@@ -87,22 +98,28 @@ public class LoginPopup {
        window.showAndWait();
    }
+    /**
+     * This function handles admin window functionality
+     */
    public static void adminPopup(){
        Stage window = new Stage();
        window.initModality(Modality.APPLICATION_MODAL);
        window.setTitle("Admin window");
+        // Information fields
        Label usernameLabel = new Label("Username: ");
        TextField usernameTextfield = new TextField();
-        usernameTextfield.setText(getUserName());
+        usernameTextfield.setText(HelpingFunctions.getUserName());
        usernameTextfield.setEditable(false);
+        // Defines all buttons
        Button addUser = new Button("Add User");
        Button deleteUser = new Button("Delete User");
        Button logout = new Button("Logout");
        Button close = new Button("Close");
+        // Handles functionality for each button
        addUser.setOnAction(event -> {
            adminAddUser();
        });
@@ -115,7 +132,7 @@ public class LoginPopup {
        });
        close.setOnAction(event -> window.close());
+        // adds all components to the VBox
        VBox layout = new VBox(10);
        layout.setAlignment(Pos.CENTER);
        layout.getChildren().addAll(usernameLabel, usernameTextfield, addUser, deleteUser, logout, close);
@@ -126,12 +143,16 @@ public class LoginPopup {
        window.showAndWait();
    }
+    /**
+     * This function adds a user to the database based on the input parameters given by the user
+     */
    public static void adminAddUser(){
        Stage window = new Stage();
        window.initModality(Modality.APPLICATION_MODAL);
        window.setTitle("Admin window");
+        // Defines all labels
        Label firstNameLabel = new Label("First Name: ");
        Label lastNameLabel = new Label("Last Name: ");
        Label phoneNoLabel = new Label("Phone No: ");
@@ -140,6 +161,7 @@ public class LoginPopup {
        Label passwordSecondLabel = new Label("Password Repeat: ");
        Label isAdminLabel = new Label("Is Admin: ");
+        // Defines all input fields
        TextField firstNameTextField = new TextField();
        TextField lastNameTextField = new TextField();
        TextField phoneNoTextField = new TextField();
@@ -149,9 +171,11 @@ public class LoginPopup {
        CheckBox isAdminBox = new CheckBox();
        isAdminBox.setSelected(false);
+        // Defines all buttons
        Button close = new Button("Close");
        Button addUser = new Button("Add User");
+        // Handles the functionality for each button
        close.setOnAction(event -> window.close());
        addUser.setOnAction(event -> {
@@ -162,7 +186,8 @@ public class LoginPopup {
                    !isValidInput(usernameTextField.getText()) &&
                    !isValidInput(passwordFirstField.getText()) &&
                    !isValidInput(passwordSecondField.getText())) {
-            // If the passwords match each other, add the user, if not display an errormessage
+            // If the passwords match each other, add the user, if not, display an error message
            if(passwordFirstField.getText().contentEquals(passwordSecondField.getText())){
                // Hashing the password if they match.
@@ -186,7 +211,7 @@ public class LoginPopup {
        });
+        // Adds all components to the VBox
        VBox layout = new VBox(10);
        layout.setAlignment(Pos.CENTER);
        layout.getChildren().addAll(firstNameLabel, firstNameTextField, lastNameLabel, lastNameTextField,
@@ -200,22 +225,30 @@ public class LoginPopup {
        window.showAndWait();
    }
+    /**
+     * This function handles deleting an account
+     */
    public static void adminDeleteUser(){
        Stage window = new Stage();
        window.initModality(Modality.APPLICATION_MODAL);
        window.setTitle("Admin window");
+        // Defines the input field
        Label usernameLabel = new Label("Username: ");
        TextField usernameTextField = new TextField();
+        // Defines all buttons
        Button close = new Button("Close");
        Button delete = new Button("Delete User");
+        // Handle the functionality for each button
        close.setOnAction(event -> window.close());
        delete.setOnAction(event -> {
+            // Validate the input parameter
            if(!isValidInput(usernameTextField.getText())) {
                try {
+                    // Checks if the user is deleted
                    boolean results = deleteUser(usernameTextField.getText());
                    if (results) {
                        NotificationPopUp.displayNotificationWindow(usernameTextField.getText() + " was successfully deleted!");
@@ -230,6 +263,7 @@ public class LoginPopup {
            }
        });
+        // Adds the components to the VBox
        VBox layout = new VBox(10);
        layout.setAlignment(Pos.CENTER);
        layout.getChildren().addAll(usernameLabel, usernameTextField, delete, close);
@@ -240,43 +274,53 @@ public class LoginPopup {
        window.showAndWait();
    }
+    /**
+     * This function handles logout functionality
+     */
    public static void logout(){
        getLogin().setText("Login");
-        setFirstName("");
+        HelpingFunctions.setFirstName("");
-        setLastName("");
+        HelpingFunctions.setLastName("");
-        setIsAdmin(false);
+        HelpingFunctions.setIsAdmin(false);
-        setPhoneNo("");
+        HelpingFunctions.setPhoneNo("");
-        setUserName("");
+        HelpingFunctions.setUserName("");
    }
+    /**
+     * This function handles popup screen for a normal user
+     */
    public static void userPopup(){
        Stage window = new Stage();
        window.initModality(Modality.APPLICATION_MODAL);
        window.setTitle("User window");
+        // Defines labels
        Label nameLabel = new Label("Name: ");
        Label phoneNoLabel = new Label("Phone no: ");
+        // Defines information fields
        TextField nameTextfield = new TextField();
        TextField phoneNoTextField = new TextField();
        nameTextfield.setEditable(false);
        phoneNoTextField.setEditable(false);
-        nameTextfield.setText(getFirstName() + " " + getLastName());
+        // Sets the values
-        phoneNoTextField.setText(getPhoneNo());
+        nameTextfield.setText(HelpingFunctions.getFirstName() + " " + HelpingFunctions.getLastName());
+        phoneNoTextField.setText(HelpingFunctions.getPhoneNo());
+        // Define buttons
        Button close = new Button("Close");
        Button logout = new Button("Logout");
+        // Handle each button
        close.setOnAction(event -> window.close());
        logout.setOnAction(event -> {
            logout();
            window.close();
        });
+        // Adds all components to the VBox
        VBox layout = new VBox(10);
        layout.setAlignment(Pos.CENTER);
        layout.getChildren().addAll(nameLabel, nameTextfield, phoneNoLabel, phoneNoTextField, logout, close);
@@ -287,6 +331,12 @@ public class LoginPopup {
        window.showAndWait();
    }
+    /**
+     * This function hash the password using the SHA-512 algorithm
+     *
+     * @param password input parameter for the password
+     * @return a 64-bit hashed string
+     */
    public static String hashPassword(String password){
        try {
            MessageDigest messageDigest = MessageDigest.getInstance("SHA-512");

--- a/src/main/java/com/application/GUI/PopUpWindows/NotificationPopUp.java
+++ b/src/main/java/com/application/GUI/PopUpWindows/NotificationPopUp.java
@@ -10,19 +10,32 @@ import javafx.scene.text.TextAlignment;
 import javafx.stage.Modality;
 import javafx.stage.Stage;
+/**
+ * This class handles functionality regarding a notification window
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class NotificationPopUp {
+        /**
+         * This function displays the notification window
+         *
+         * @param message input parameter for what to display in the window
+         */
        public static void displayNotificationWindow(String message){
        Stage window = new Stage();
        window.initModality(Modality.APPLICATION_MODAL);
        window.setTitle("Notification window");
+        // Defines label
        Label messageLabel = new Label();
        messageLabel.setText(message);
        messageLabel.setWrapText(true);
        messageLabel.setTextAlignment(TextAlignment.CENTER);
+        // Define buttons and handles functionality
        Button close = new Button("Close");
        close.setOnAction(event -> window.close());
@@ -32,6 +45,7 @@ public class NotificationPopUp {
                }
        });
+        // Adds the components to the VBox
        VBox layout = new VBox(10);
        layout.setAlignment(Pos.CENTER);
        layout.getChildren().addAll(messageLabel,close);

--- a/src/main/java/com/application/GUI/PopUpWindows/OutputPopup.java
+++ b/src/main/java/com/application/GUI/PopUpWindows/OutputPopup.java
@@ -2,6 +2,7 @@ package com.application.GUI.PopUpWindows;
 import com.application.DB.Constants;
 import com.application.DB.DB;
+import com.application.DB.Settings;
 import javafx.geometry.Pos;
 import javafx.scene.Scene;
 import javafx.scene.control.Button;
@@ -15,11 +16,20 @@ import java.time.LocalDateTime;
 import java.time.format.DateTimeFormatter;
 import static com.application.DB.Constants.IS_FINISHED;
-import static com.application.DB.Constants.MAX_USER_INPUT_CHARACTERS;
+import static com.application.DB.Settings.MAX_USER_INPUT_CHARACTERS;
 import static com.application.DB.HelpingFunctions.isValidInput;
+/**
+ * This class handles the output window for sending the resulted manual moisture levels
+ *
+ * @author Eilert Tunheim, Karin Pettersen, Mads Arnesen
+ * @version 1.0.0
+ */
 public class OutputPopup {
+    /**
+     * This function handles the output window and it's functionality
+     */
    public static void displayOutputWindow(){
        Stage window = new Stage();
@@ -53,19 +63,19 @@ public class OutputPopup {
                            err = true;
                        }
+                        // Checks if there is an error
                        if(!err){
                            if(!moistureCheckTextField.getCharacters().toString().isEmpty() &&
                                    !moistureCheckTextField.getCharacters().toString().equals("Please enter a value")) {
                                Constants.STOP_TIME = null;
                                DB.pushManMoisture(moistureCheckTextField.getCharacters().toString());
-                                Constants.NUMBER_OF_CHECKS++;
+                                Settings.NUMBER_OF_CHECKS++;
                                window.close();
                            } else {
                                NotificationPopUp.displayNotificationWindow("Please enter a value!");
                                moistureCheckTextField.setPromptText("Please enter a value");
                            }
                        } else {
-                            NotificationPopUp.displayNotificationWindow("A maximum of "+MAX_USER_INPUT_CHARACTERS+" characters is allowed!");
                            moistureCheckTextField.setText("");
                            moistureCheckTextField.setPromptText("Please enter a value");
                        }
@@ -89,6 +99,7 @@ public class OutputPopup {
                    err = true;
                }
+                // Checks if there is an error
                if(!err) {
                    if (!moistureCheckTextField.getCharacters().toString().isEmpty() &&
                            !moistureCheckTextField.getCharacters().toString().equals("Please enter a value")) {
@@ -101,7 +112,6 @@ public class OutputPopup {
                        moistureCheckTextField.setPromptText("Please enter a value");
                    }
                } else {
-                    NotificationPopUp.displayNotificationWindow("A maximum of "+MAX_USER_INPUT_CHARACTERS+" characters is allowed!");
                    moistureCheckTextField.setText("");
                    moistureCheckTextField.setPromptText("Please enter a value");
                }
@@ -110,7 +120,7 @@ public class OutputPopup {
            }
        });
+        // Adds the components to the VBox
        VBox layout = new VBox(10);
        layout.setAlignment(Pos.CENTER);
        layout.setSpacing(10);

--- a/src/main/java/com/application/Main.java
+++ b/src/main/java/com/application/Main.java
@@ -56,13 +56,16 @@ public class Main extends Application {
    /**
     * Starts the application
     *
-     * @param args
+     * @param args input parameter
-     * @throws IOException
+     * @throws IOException throws exception if an error occurs
     */
    public static void main(String[] args) throws IOException {
        launch(args);
    }
+    /**
+     * This function exists the application and stops all threads
+     */
    public static void exitApplication(){
        Platform.exit();
        System.exit(0);
@@ -89,8 +92,8 @@ public class Main extends Application {
    /**
     * Sets the primaryStage and sets the scene for the window.
     *
-     * @param primaryStage
+     * @param primaryStage The main stage
-     * @throws Exception
+     * @throws Exception throws exception if an error occurs
     */
    @Override
    public void start(Stage primaryStage) throws Exception {
@@ -143,6 +146,7 @@ public class Main extends Application {
        InputPopup.display();
    }
+    // Getters and setters
    public static void setTreeSpeciesText(String treeSpeciesText) {
        Main.treeSpeciesText.setText(treeSpeciesText);
    }

--- a/src/main/resources/META-INF/MANIFEST.MF
+++ b/src/main/resources/META-INF/MANIFEST.MF
+Manifest-Version: 1.0
+Main-Class: com.application.Main
--- a/target/classes/META-INF/MANIFEST.MF
+++ b/target/classes/META-INF/MANIFEST.MF
+Manifest-Version: 1.0
+Main-Class: com.application.Main
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